PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12690g01004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 438aa    MW: 51239.4 Da    PI: 10.3558
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12690g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.32e-36952483130
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec...ea 75 
                                kkdrhski T +g+RdRR+Rls+++a+ fF Lqd+L f k+skt+eWLl ++k  ikel +          s ss sec   + 
  Niben101Scf12690g01004.1  95 SKKDRHSKINTTKGPRDRRIRLSIDIARNFFNLQDMLRFEKASKTLEWLLIKSKSDIKELSKRrtstvmganSESSTSECevvSG 179
                               69*************************************************************9999998874444466655522 PP

                       TCP  76 esssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekm 130
                                ++sss+++   +                 +++++ +k++k  ++aa ++ +akesr++ar+rarert+ k+
  Niben101Scf12690g01004.1 180 IDESSSNHK---AntkgnscnkekkkkekeEEEEEYKKKEKLVRRAAFHHPFAKESRKQARERARERTQLKK 248
                               222222222...122345666777777765556666688888999999********************9876 PP

2TCP117.81.4e-362744283131
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec...ea 75 
                                kkdrhski T +g+RdRR+Rls+++a+ fF Lqd+L f k+skt+eWLl ++k  ikel +          s ss sec   + 
  Niben101Scf12690g01004.1 274 SKKDRHSKINTTKGPRDRRIRLSIDIARNFFNLQDMLRFEKASKTLEWLLIKSKSDIKELSKRrtstvmganSESSTSECevvSG 358
                               69*************************************************************9999998874444466655522 PP

                       TCP  76 esssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                                ++sss+++   +                 +++++ +k++k  ++aa ++ +akesr++ar+rarert+ k++
  Niben101Scf12690g01004.1 359 IDESSSNHK---AntkgnscnkekkkkekeEEEEEYKKKEKLVRRAAFHHPFAKESRKQARERARERTQLKKN 428
                               222222222...122345666777777765556666688888999999********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-4195248IPR005333Transcription factor, TCP
PROSITE profilePS5136931.09796154IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.554230247IPR017888CYC/TB1, R domain
PfamPF036341.2E-41274427IPR005333Transcription factor, TCP
PROSITE profilePS5136931.097275333IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.554409426IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MYNSSNYSYN YNPIFSSNLF NIPSPCMRYE HDLFFQYYHD HLQQNLDDTL AEISAIINTA  60
DSNKDDAIIS RNELEQEQEA RKNKKGKVSI NKRVSKKDRH SKINTTKGPR DRRIRLSIDI  120
ARNFFNLQDM LRFEKASKTL EWLLIKSKSD IKELSKRRTS TVMGANSESS TSECEVVSGI  180
DESSSNHKAN TKGNSCNKEK KKKEKEEEEE EYKKKEKLVR RAAFHHPFAK ESRKQARERA  240
RERTQLKKNF CESGEVFNSK SLYSXKVSIN KRVSKKDRHS KINTTKGPRD RRIRLSIDIA  300
RNFFNLQDML RFEKASKTLE WLLIKSKSDI KELSKRRTST VMGANSESST SECEVVSGID  360
ESSSNHKANT KGNSCNKEKK KKEKEEEEEE YKKKEKLVRR AAFHHPFAKE SRKQARERAR  420
ERTQLKKNFC ESGNYYTL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616486.11e-146PREDICTED: transcription factor CYCLOIDEA-like isoform X1
RefseqXP_009616487.11e-146PREDICTED: transcription factor CYCLOIDEA-like isoform X1
RefseqXP_009616489.11e-146PREDICTED: transcription factor CYCLOIDEA-like isoform X2
SwissprotO492502e-24CYCLD_ANTMA; Transcription factor CYCLOIDEA
SwissprotQ9SBV61e-24CYCLD_ANTML; Transcription factor CYCLOIDEA (Fragment)
TrEMBLI1VE905e-77I1VE90_PETHY; Putative transcription factor
STRINGSolyc06g069240.1.12e-46(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-23TCP domain protein 12